The Separatists missions are the Star Trek Fleet Command storyline about the Klingon Separatists, the rebels trying to overthrow the Klingon High Council and spreading chaos across the Beta Quadrant. There are 17 missions, none with a recommended level, and almost all need warp 17 or 18 to complete, with one at warp 13 and one at warp 20. The headline rewards are officer shards for Chang, Vemet or Spock, Koth, Javaid and Hendorff, along with recruit tokens, faction credits and reputation.
How the Separatists missions work
Every mission here is a single mission; there are no multi-part chains. The story opens with The Klingon Separatists, which you can pick up in Ajilon, Narendra or Qualor. After a fight with a Separatist ship in Angosia you choose how to handle the situation, and each of the three paths pays 4 shards of a different officer, so pick the path by the officer you want.
From there the main line runs through The Battle for Narendra, Fair Game and Bystanders, then We’re In This Together, where you contact the Separatist leader Wral’Vor, and on to A Place Called Home. Alongside it, three short lines of three missions each follow one faction:
- Klingon: Infiltration of House Antaak, Perimeter Grid, then A Crime By Any Other Means
- Romulan: Effortless, A Gentle Push in The Right Direction, then Too Successful
- Federation: Invasion, Plan B, then Desperate Times
Open Rebellion, a Federation mission to bring Captain Raak back to face justice, and In Motion, the one mission that needs warp 20, stand on their own.
The faction missions pay reputation with the side you help and take a smaller amount from one or both of the others. Fair Game is the exception, with 1,600 points for each of the Federation, the Klingons and the Romulans. The fights stay modest. Most named targets fall between about 44,000 and 101,520 strength, the top end being the Separatist flagship in A Crime By Any Other Means and the House Antaak Warship in Fair Game. Several missions also ask for a payment, such as 10,000 Dilithium in Infiltration of House Antaak and a 50,000 Tritanium donation in Desperate Times.
Separatists mission rewards worth chasing
Six officers have shards in this storyline. The Klingon Separatists pays 4 shards of Chang, Vemet or Spock depending on your path, Effortless pays 5 Javaid shards, Plan B pays 5 Hendorff shards along with 1.1 million Parsteel, and A Crime By Any Other Means pays 3 Koth shards.
For recruit tokens, A Place Called Home lists 500 Klingon Recruit Tokens and 500 Romulan Recruit Tokens among its rewards, Too Successful pays 200 Ultra Recruit Tokens if you rescue the Major, and Open Rebellion pays 150 Premium Recruit Tokens. We’re In This Together gives 40 each of 3★ Interceptor, Explorer and Battleship Parts, and Invasion adds 125 3★ Explorer Parts. For resources, Infiltration of House Antaak pays 800,000 Parsteel, In Motion pays 600,000 Parsteel and 80,000 Tritanium, and Bystanders and Desperate Times pay out in 8 Hour and 3 Hour Speed Ups.
All 17 Separatists missions
None of these missions has a recommended level, so the table lists them by name, with the warp needed to complete each one and its rewards.
| Mission | Warp to complete | Rewards |
|---|---|---|
| A Crime By Any Other Means | 17 | 3 Koth shards, 25K Dilithium, 180 Klingon Credits, 2,000 Klingon Points |
| A Gentle Push in The Right Direction | 17 | 119K Tritanium, 35 5 Minute Repair Speed Up, 130 Romulan Credits, 2,000 Romulan Points |
| A Place Called Home | 18 | 500 Klingon Recruit Token, 5 3★ Uncommon Refined Crystal, 250 Klingon Credits, 2,500 Klingon Points |
| Bystanders | 18 | 3 8 Hour Speed Up, 4 3 Hour Speed Up, 4 1 Hour Speed Up |
| Desperate Times | 17 | 3 8 Hour Speed Up, 8 3 Hour Speed Up |
| Effortless | 18 | 5 Javaid shards, 25K Dilithium, 190 Romulan Credits, 2,000 Romulan Points |
| Fair Game | 18 | 36K Dilithium, 1,600 Federation Points, 1,600 Klingon Points, 1,600 Romulan Points |
| In Motion | 20 | 600K Parsteel, 80K Tritanium, 5 3 Hour Speed Up, 32K Dilithium |
| Infiltration of House Antaak | 18 | 800K Parsteel, 3 8 Hour Speed Up |
| Invasion | 18 | 125 3★ Explorer Parts, 42 5 Minute Repair Speed Up, 170 Federation Credits, 2,000 Federation Points |
| Open Rebellion | 18 | 150 Premium Recruit Token, 80K Tritanium, 30 5 Minute Repair Speed Up |
| Perimeter Grid | 18 | 140K Tritanium, 20 15 Minute Repair Speed Up, 170 Klingon Credits, 2,000 Klingon Points |
| Plan B | 17 | 5 Hendorff shards, 1.1M Parsteel, 60K Tritanium |
| The Battle for Narendra | 18 | 120K Tritanium, 20K Dilithium, 6 15 Minute Repair Speed Up, 25 5 Minute Repair Speed Up |
| The Klingon Separatists | 18 | 4 Chang shards, 4 Vemet shards, 4 Spock shards, 200 Klingon Credits |
| Too Successful | 18 | 200 Ultra Recruit Token, 170 Romulan Credits, 2,000 Romulan Points, -1,200 Federation Points |
| We’re In This Together | 13 | 40 3★ Interceptor Parts, 40 3★ Explorer Parts, 40 3★ Battleship Parts |
Video: Separatists missions
https://youtu.be/i5ylMHYj4CM
The Klingon Separatists also turn up in From the Brink in the Business as Usual Arc. The Swarm missions are another storyline without level recommendations, at similar warp, and the mission guide lists every mission in the game by level.
